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SRX423143: GSM1302302: crown roots; Zea mays; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer) run: 11M spots, 539.8M bases, 355.1Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Zea mays Transcriptome or Gene expression
show Abstracthide Abstract
Four sRNA libraries were generated and sequenced from the early developmental stage of primary roots (PRY), the later developmental stage of maize primary roots (PRO), seminal roots (SR), and crown roots (CR). Through integrative analysis, we identified 501 miRNAs (246 conserved and 255 novel ones) and found that the expression patterns of miRNAs differed dramatically in different maize roots. Overall design: we generated and sequenced four maize small RNA libraries from the early developmental stage of primary roots (PRY), the later developmental stage of maize primary roots (PRO), seminal roots (SR), and crown roots (CR) using Solexa high-throughput sequencing technology
Sample: crown roots
SAMN02570402 • SRS527146 • All experiments • All runs
Organism: Zea mays
Library:
Instrument: Illumina Genome Analyzer
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was extracted from the shoots and roots with TRIZOL reagent (Invitrogen, Carlsbad, CA, USA). Total RNAs were purified by electrophoretic separations on a 15% TBE-Urea denaturing PAGE gel. The sRNA regions corresponding to 18- to 30-nucleotide bands were excised and recovered. Subsequently, those sRNAs were 5' and 3' RNA adapter-ligated using T4 RNA ligase. RT-PCR was performed for 18 cycles, and the products were purified and sequenced using an Illumina/Solexa Genome Analyzer at the Beijing Genomics Institute,Shenzhen, China.
Experiment attributes:
GEO Accession: GSM1302302
Links:
External link:
Runs: 1 run, 11M spots, 539.8M bases, 355.1Mb
Run# of Spots# of BasesSizePublished
SRR110390911,017,046539.8M355.1Mb2015-07-22

ID:
598617

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